Top Edges: the network is filtered to only include edges with evidence supporting a tissue-specific functional interaction
[entrez gene id 1][entrez gene id 2][posterior prob.]
Full Network: the network is fully connected
[entrez gene id 1][entrez gene id 2][posterior prob., with known edges set to 1][posterior prob.]
Gold Standard: each text file (e.g. kidney.dat) contains edges with values 1 through 4 corresponding to C1 - C4 described in our paper. C1 edges are used as positives and C2-C4 are used as negatives to train the tissue-specific models.
Note: These downloadable networks assume a prior probability of 0.1 to match the displayed networksDownload gzip archives of all networks and standards. Note: These are very large files. Consider using the Python script below to download individual networks in smaller increments if your connection is unstable.
Download tissue-specific networks using our Python script. This is recommended for downloading all networks incrementally or when dealing with unstable connections. Requirements: Python 3.6+ (no additional packages needed).
| Tissue | Top edges | Full network | Gold Standard |
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